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Proteome Science publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 10 Supplement 1

Selected articles from the IEEE International Conference on Bioinformatics and Biomedicine 2011: Proteome Science

Proceedings

IEEE International Conference on Bioinformatics and Biomedicine 2011

Atlanta, GA, USA

12-15 November 2011

Edited by Fang-Xiang Wu and Habtom W Ressom

Conference website

Protein surface representation and analysis by dimension reduction

Heng Yang, Rehman Qureshi, Ahmet Sacan Proteome Science 2012, 10(Suppl 1):S1 (21 June 2012)

Abstract | Full text | PDF | PubMed

In-silico identification of phenotype-biased functional modules

Kanchana Padmanabhan, Kevin Wilson, Andrea M Rocha, Kuangyu Wang, James R Mihelcic, Nagiza F Samatova Proteome Science 2012, 10(Suppl 1):S2 (21 June 2012)

Abstract | Full text | PDF | PubMed

Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps

Tak Chiam, Young-Rae Cho Proteome Science 2012, 10(Suppl 1):S3 (21 June 2012)

Abstract | Full text | PDF | PubMed

Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters

Yuehua Zhang, Bo Li, Pradip K Srimani, Xuewen Chen, Feng Luo Proteome Science 2012, 10(Suppl 1):S4 (21 June 2012)

Abstract | Full text | PDF | PubMed

Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface

Brian S Olson, Amarda Shehu Proteome Science 2012, 10(Suppl 1):S5 (21 June 2012)

Abstract | Full text | PDF | PubMed

Modeling regionalized volumetric differences in protein-ligand binding cavities

Brian Y Chen, Soutir Bandyopadhyay Proteome Science 2012, 10(Suppl 1):S6 (21 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Using multitask classification methods to investigate the kinase-specific phosphorylation sites

Shan Gao, Shuo Xu, Yaping Fang, Jianwen Fang Proteome Science 2012, 10(Suppl 1):S7 (21 June 2012)

Abstract | Full text | PDF | PubMed

Ion annotation-assisted analysis of LC-MS based metabolomic experiment

Rency S Varghese, Bin Zhou, Mohammad R Nezami Ranjbar, Yi Zhao, Habtom W Ressom Proteome Science 2012, 10(Suppl 1):S8 (21 June 2012)

Abstract | Full text | PDF | PubMed

IDDI: integrated domain-domain interaction and protein interaction analysis system

Yul Kim, Bumki Min, Gwan-Su Yi Proteome Science 2012, 10(Suppl 1):S9 (21 June 2012)

Abstract | Full text | PDF | PubMed

Computational synchronization of microarray data with application to Plasmodium falciparum

Wei Zhao, Justin Dauwels, Jacquin C Niles, Jianshu Cao Proteome Science 2012, 10(Suppl 1):S10 (21 June 2012)

Abstract | Full text | PDF | PubMed

Epigenetic functions enriched in transcription factors binding to mouse recombination hotspots

Min Wu, Chee-Keong Kwoh, Teresa M Przytycka, Jing Li, Jie Zheng Proteome Science 2012, 10(Suppl 1):S11 (21 June 2012)

Abstract | Full text | PDF | PubMed

An unsupervised machine learning method for assessing quality of tandem mass spectra

Wenjun Lin, Jianxin Wang, Wen-Jun Zhang, Fang-Xiang Wu Proteome Science 2012, 10(Suppl 1):S12 (21 June 2012)

Abstract | Full text | PDF | PubMed

A framework for personalized medicine: prediction of drug sensitivity in cancer by proteomic profiling

Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean X Gao Proteome Science 2012, 10(Suppl 1):S13 (21 June 2012)

Abstract | Full text | PDF | PubMed

Protein sequence classification using feature hashing

Cornelia Caragea, Adrian Silvescu, Prasenjit Mitra Proteome Science 2012, 10(Suppl 1):S14 (21 June 2012)

Abstract | Full text | PDF | PubMed

Identifying transcription factors and microRNAs as key regulators of pathways using Bayesian inference on known pathway structures

Damian Roqueiro, Lei Huang, Yang Dai Proteome Science 2012, 10(Suppl 1):S15 (21 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Seed selection strategy in global network alignment without destroying the entire structures of functional modules

Bingbo Wang, Lin Gao Proteome Science 2012, 10(Suppl 1):S16 (21 June 2012)

Abstract | Full text | PDF | PubMed

High performance transcription factor-DNA docking with GPU computing

Jiadong Wu, Bo Hong, Takako Takeda, Jun-tao Guo Proteome Science 2012, 10(Suppl 1):S17 (21 June 2012)

Abstract | Full text | PDF | PubMed

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks

Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang Proteome Science 2012, 10(Suppl 1):S18 (21 June 2012)

Abstract | Full text | PDF | PubMed

Intrinsic disorder in putative protein sequences

Uros Midic, Zoran Obradovic Proteome Science 2012, 10(Suppl 1):S19 (21 June 2012)

Abstract | Full text | PDF | PubMed | F1000 Biology

Prediction of heme binding residues from protein sequences with integrative sequence profiles

Yi Xiong, Juan Liu, Wen Zhang, Tao Zeng Proteome Science 2012, 10(Suppl 1):S20 (21 June 2012)

Abstract | Full text | PDF | PubMed