Table 1

Proteins which are potential candidates for endoproteolytic cleavage events.

Protein ID
Protein Name
Predicted MW
Observed MW
Observed Difference
Length of Transit/Signal peptide
Predicted MW after cleaving of Transit or Signal peptide
MW Difference for protein with cleaved leader

NP_001852
Cytochrome c oxidase subunit IV isoform 1 precursor
19577
16996
-2582
22 AA
17200
-205
NP_002483
NADH dehydrogenase
21750
16666
-5084
46 AA
17000
-334
NP_000088
Coproporphyrinogen oxidase
50175
36543
-13632
131 AA
36900
-357
NP_002114
Major histocompatibility complex, class II, DQ beta 1 precursor
29733
25896
-3837
32 AA
26300
-404
NP_004541
NADH dehydrogenase (ubiquinone) Fe-S protein 2
52545
48185
-4360
33 AA
49000
-815
NP_004083
Mitochondrial short-chain enoyl-coenzyme A hydratase 1
31371
27499
-3872
27 AA
28400
-901
NP_000933
peptidylprolyl isomerase B (cyclophilin B)
23742
19360
-4382
25 AA
20300
-940

Ahmad et al. Proteome Science 2005 3:6   doi:10.1186/1477-5956-3-6