Figure 1.

Screen captures of the proteogest output files. The Methanococcus jannaschii proteome was digested C-terminal to lysine and arginine residues (cleavage criteria "KX,RX"). A) The 'Simple' file lists the peptide products of each protein, their isotopic and average molecular masses, and their sequence; B) The 'Annotated' file also lists the peptide products of each protein, along with the counts of each amino acid residue for each peptide; C) A screen capture from the Protein Analysis section of the 'Summary' file; D) A screen capture from the Peptide Analysis section of the 'Summary' file.